This is probably where the fun begins. Pre-processing is where you stack the individual exposures to improve the signal-to-noise ratio and also where you try and remove various artefacts in the images using flat fields and dark frames. At the end of pre-processing (also called reduction) you will have a single FITS image which you can then post-process in a programme such as Photoshop (see Step 6).
To start pre-processing in AstroArt, select Pre-Processing from the Tools menu (or press the third toolbar from the left). That will open up the Pre-Processing window's Files tab:

First step is to select the files you want to pre-process by navigating through the folder structure top left. Once in the correct folder, select which files you want then drag them into the appropriate box. Here I've put a Master flat in the Flats pane and 10 image files in the Images pane. For my camera the dark noise is very low so I don't typically use dark frames, but other CCDs will need to use dark frames.
Next step is to tweak the options you want AstroArt to use when it pre-processes the files. The important options for me are:
When you've set the options, press OK and the pre-processing will begin.

As AstroArt performs the pre-processing, the Confirm Image window will appear (assuming you selected the Confirm Image option above). The image below shows the second one in a sequence of 10 (look at the title bar, showing 2/10). For each frame you press the "Tick" or "-" button to accept or reject the frame.

Once all the files have been pre-processed, the stacked image will be displayed. I immediately save the image as a FITS file, with a suitably descriptive name, e.g. NGC 2420 10x60s.fit. I don't perform any further processing in AstroArt, but I do tend to separate out the Luminance, Red, Green and Blue channels to separate files. Under the Color menu, select Luminance, Red, etc in turn. This will open a new image for each channel; save each of them to a separate file (I use the _L, _R, etc which AstroArt appends to the name I entered above).
That's it. Onto Step 6 for final processing.
